ermineR VS orthologr

Compare ermineR vs orthologr and see what are their differences.

ermineR

R wrapper for ermineJ (by PavlidisLab)
ogan-bio gene-sets Bioinformatics Genomics Biology enrichment-analysis
Source Code
pavlidislab.github.io
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orthologr

Genome wide orthology inference and dNdS estimation (by drostlab)
blast-searches orthology-inference comparative-genomics-studies Genomics sequence-alignments Blast comparative dnds-estimation codon-alignment R entire-genomes orthologous-genes biomartr species comparing-genomes genomics-studies retrieve-genomes comparative-genomics proteome sequence-alignment
Source Code
drostlab.github.io
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ermineR orthologr
1 1
6 83
- -
0.0 7.3
over 1 year ago 7 months ago
R R
GNU General Public License v3.0 or later GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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ermineR

Posts with mentions or reviews of ermineR. We have used some of these posts to build our list of alternatives and similar projects.
  • Gene ontology of differentially expressed genes in R
    1 project | /r/bioinformatics | 4 Aug 2021
    I would recommend ermineJ as thier statistical approach is better suited to overcome issues with how GO is constructed and the imbalance in the sizes of GO terms (sizes meaning the number of genes assigned). They have a graphical, command line interface and an R package link

orthologr

Posts with mentions or reviews of orthologr. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing ermineR and orthologr you can also consider the following projects:

full_spectrum_bioinformatics - An open-access bioinformatics text

gggenomes - A grammar of graphics for comparative genomics

rhmmer - Simple R utilities for working with HMMER

awesome-R - A curated list of awesome R packages, frameworks and software.

Baltica - Baltica: integrated differential junction usage

ggplot2 - An implementation of the Grammar of Graphics in R

ermineR vs full_spectrum_bioinformatics orthologr vs gggenomes ermineR vs rhmmer orthologr vs awesome-R ermineR vs Baltica orthologr vs ggplot2