eggnog-mapper
Fast genome-wide functional annotation through orthology assignment (by eggnogdb)
goatools
Python library to handle Gene Ontology (GO) terms (by tanghaibao)
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| eggnog-mapper | goatools | |
|---|---|---|
| 1 | 2 | |
| 529 | 723 | |
| 3.0% | - | |
| 4.3 | 5.0 | |
| about 2 months ago | 15 days ago | |
| Python | Python | |
| GNU Affero General Public License v3.0 | BSD 2-clause "Simplified" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
eggnog-mapper
Posts with mentions or reviews of eggnog-mapper.
We have used some of these posts to build our list of alternatives
and similar projects.
goatools
Posts with mentions or reviews of goatools.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Confused about gene name/id formats when doing enrichment with goatools
I'm trying to do enrichment analysis with goatools for the first time in my life, and I have no idea what I'm doing. (I'm a computer scientist with practically no bio background).
-
Cytoscape & GO
I eventually moved on to use this: https://github.com/tanghaibao/goatools
What are some alternatives?
When comparing eggnog-mapper and goatools you can also consider the following projects:
atlas - ATLAS - Three commands to start analyzing your metagenome data
galaxy - Data intensive science for everyone.
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
FPL-Defence-Rotations - Best options to rotate defenders in Fantasy Premier League 2023-24
Hail - Cloud-native genomic dataframes and batch computing
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
gisaid-uploader - Simplified & efficient GISAID interactions.