deepchem
enrich_omics
| deepchem | enrich_omics | |
|---|---|---|
| 4 | 2 | |
| 5,124 | 17 | |
| 1.8% | - | |
| 9.9 | 3.6 | |
| 5 days ago | about 2 months ago | |
| Python | Python | |
| MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
deepchem
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Query
You can see a number of splitter implementations from the DeepChem package here. The code is quite elaborate but for your case it may not need to be. Still, if you can use their package for splitting that would be easiest.
- Deepchem – Democratizing Deep-Learning for Drug Discovery
- Deepchem dataset load_tox21()
- How do I transition into bioinformatics from a senior software engineer (14 years of experience)?
enrich_omics
- A python package to perform gene enrichment analysis (Bioinformatics/ health data science)
-
Get enrichment results in python with enrich-omics!
Here's the link to the package on Github: https://github.com/saramasarone/enrich_omics!
What are some alternatives?
torchdrug - A powerful and flexible machine learning platform for drug discovery
deepqmc - Deep learning quantum Monte Carlo for electrons in real space
Biopython - Official git repository for Biopython (originally converted from CVS)
bidd-molmap - MolMapNet: An Efficient ConvNet with Knowledge-based Molecular Represenations for Molecular Deep Learning
OpenWorm - Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
chemicalx - A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
pytorch_tempest - My repo for training neural nets using pytorch-lightning and hydra
caer - High-performance Vision library in Python. Scale your research, not boilerplate.
Wham - Structural variant detection and association testing
libsequence - libsequence: a C++ class library for evolutionary genetic analysis
libRL - A Python library for characterizing Microwave Absorption