dcm2niix
DicomToMesh
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| dcm2niix | DicomToMesh | |
|---|---|---|
| 6 | 1 | |
| 807 | 408 | |
| 4.7% | 2.7% | |
| 7.6 | 6.4 | |
| 5 days ago | 4 months ago | |
| C++ | C++ | |
| GNU General Public License v3.0 or later | MIT License |
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dcm2niix
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I have a doubt in brain MRI scan
Keep in mind that DICOM images are always converted to the NIfTI format when dealing with neuroimaging data, so the different software are expecting this image type. You should always keep the original DICOM files in your archive, but convert them to NIfTI and use that as your raw data input. To convert DICOM to NIfTI, you can use a tool like dcm2niix dcm2niix.
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Conversion of DICOM to .nii.gz
When I try to execute the .exe in the link you have provided the program does not run. However, according to this site: https://github.com/rordenlab/dcm2niix! the niix is included in MRIcroGL which I have tried.
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Can somebody help me quantify spatial resolution in CT scans of mice?
The spatial resolution of the scan is typically in the DICOM header, isn't it? Maybe try running the DICOM through something like dcm2niix (https://github.com/rordenlab/dcm2niix) which will convert to a NIFTI formatted image and generate a JSON file from the header. The header support isn't complete, so it might not get things correct from your CT image (or from an animal scanner for that matter), but it's worth a shot. I imagine there are similar tools for CT.
- Full-size 3D print of my brain
- Convert DICOM Slices to Nifti Using Nibabel(Python)
DicomToMesh
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I have a doubt in brain MRI scan
I am using this to generate the mesh. https://github.com/AOT-AG/DicomToMesh
What are some alternatives?
jpeg-autorotate - 📸 Node module to rotate JPEG images based on EXIF orientation.
pyvista - 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
brainflow - BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors
PET-NeuS - PET-NeuS: Positional Encoding Tri-Planes for Neural Surfaces (CVPR 2023)
gdl - GDL - GNU Data Language
mayo - 3D CAD viewer and converter based on Qt + OpenCascade
MRIcroGL - v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
simnibs - Simulation of Non-Invasive Brain Stimulation
City3D - Large-scale LoD2 Building Reconstruction from Airborne LiDAR Point Clouds
ESP32-targz - 🗜️ An Arduino library to unpack/uncompress tar, gz, and tar.gz files on ESP32 and ESP8266
F3D - Fast and minimalist 3D viewer.