Can somebody help me quantify spatial resolution in CT scans of mice?

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Dicom nifti mri mri-images Research

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  • dcm2niix

    dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

    • The spatial resolution of the scan is typically in the DICOM header, isn't it? Maybe try running the DICOM through something like dcm2niix (https://github.com/rordenlab/dcm2niix) which will convert to a NIFTI formatted image and generate a JSON file from the header. The header support isn't complete, so it might not get things correct from your CT image (or from an animal scanner for that matter), but it's worth a shot. I imagine there are similar tools for CT.

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