I have a doubt in brain MRI scan

This page summarizes the projects mentioned and recommended in the original post on /r/MRI

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  • DicomToMesh

    A command line tool to transform a DICOM volume into a 3d surface mesh (obj, stl or ply). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning. Works on Linux, OSX and Windows.

  • I am using this to generate the mesh. https://github.com/AOT-AG/DicomToMesh

  • dcm2niix

    dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

  • Keep in mind that DICOM images are always converted to the NIfTI format when dealing with neuroimaging data, so the different software are expecting this image type. You should always keep the original DICOM files in your archive, but convert them to NIfTI and use that as your raw data input. To convert DICOM to NIfTI, you can use a tool like dcm2niix dcm2niix.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • simnibs

    Simulation of Non-Invasive Brain Stimulation

  • What I would recommend is to use either SimNIBS, so you load the imaging data that you have and then it generates the mesh for you, since this program needs the mesh to perform brain stimulation simulations (you don't care about the simulation part, but only for the mesh). A direct tutorial reference for SimNIBS can be found here.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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