cyvcf2 VS truvari

Compare cyvcf2 vs truvari and see what are their differences.

cyvcf2

cython + htslib == fast VCF and BCF processing (by brentp)
Vcf Htslib Cython Genomics Bioinformatics
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truvari

Structural variant toolkit for VCFs (by ACEnglish)
structural-variation Vcf Bioinformatics Data Science Genomics vcf-comparison annotation-tool benchmark-scripts sequencing-data sv-merging
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cyvcf2 truvari
1 1
358 292
- 3.8%
7.7 9.2
2 months ago 5 days ago
Cython Python
MIT License MIT License
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cyvcf2

Posts with mentions or reviews of cyvcf2. We have used some of these posts to build our list of alternatives and similar projects.

truvari

Posts with mentions or reviews of truvari. We have used some of these posts to build our list of alternatives and similar projects.
  • VCF files for ML and AI
    1 project | /r/bioinformatics | 12 Nov 2021
    If you use python and are familiar with pandas (which is more data science friendly than anything VCF), Truvari has a utility for conversion. `truvari vcf2df input.vcf.gz output.jl` If the VCFs are very large, I'd also consider scikit-allele.

What are some alternatives?

When comparing cyvcf2 and truvari you can also consider the following projects:

pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Sniffles - Structural variation caller using third generation sequencing

htslib - C library for high-throughput sequencing data formats

gwas2vcf - Convert GWAS summary statistics to VCF

chatnoir-resiliparse - A robust web archive analytics toolkit

TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.

hts.cr - HTSlib bindings for Crystal

Hail - Cloud-native genomic dataframes and batch computing

ruby-htslib - HTSlib bindings for Ruby

locust - Write scalable load tests in plain Python 🚗💨

hap.py - Haplotype VCF comparison tools

cyvcf2 vs pyrodigal truvari vs Sniffles cyvcf2 vs htslib truvari vs gwas2vcf cyvcf2 vs chatnoir-resiliparse truvari vs TileDB-VCF cyvcf2 vs hts.cr truvari vs Hail cyvcf2 vs ruby-htslib truvari vs locust cyvcf2 vs Hail truvari vs hap.py