truvari VS Sniffles

Compare truvari vs Sniffles and see what are their differences.

truvari

Structural variant toolkit for VCFs (by ACEnglish)
structural-variation Vcf Bioinformatics Data Science Genomics vcf-comparison annotation-tool benchmark-scripts sequencing-data sv-merging
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Sniffles

Structural variation caller using third generation sequencing (by fritzsedlazeck)
Bioinformatics structural-variations ngm-lr pacbio nanopore structural-variation bioconda
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truvari Sniffles
1 1
287 507
5.6% -
9.2 7.7
3 days ago 4 days ago
Python Python
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

truvari

Posts with mentions or reviews of truvari. We have used some of these posts to build our list of alternatives and similar projects.
  • VCF files for ML and AI
    1 project | /r/bioinformatics | 12 Nov 2021
    If you use python and are familiar with pandas (which is more data science friendly than anything VCF), Truvari has a utility for conversion. `truvari vcf2df input.vcf.gz output.jl` If the VCFs are very large, I'd also consider scikit-allele.

Sniffles

Posts with mentions or reviews of Sniffles. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing truvari and Sniffles you can also consider the following projects:

gwas2vcf - Convert GWAS summary statistics to VCF

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

cyvcf2 - cython + htslib == fast VCF and BCF processing

manta - Structural variant and indel caller for mapped sequencing data

Hail - Cloud-native genomic dataframes and batch computing

pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

locust - Write scalable load tests in plain Python 🚗💨

hap.py - Haplotype VCF comparison tools

truvari vs gwas2vcf Sniffles vs MultiQC truvari vs TileDB-VCF Sniffles vs fastp truvari vs cyvcf2 Sniffles vs manta truvari vs Hail Sniffles vs pipeline-structural-variation truvari vs locust truvari vs hap.py