cyvcf2 VS pyrodigal

Compare cyvcf2 vs pyrodigal and see what are their differences.

cyvcf2

cython + htslib == fast VCF and BCF processing (by brentp)
Vcf Htslib Cython Genomics Bioinformatics
Source Code
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pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! (by althonos)
orf-finder metagenomes Python bioconda python-library cython-wrapper python-interface prodigal Genome gene-finding Bioinformatics Simd
Source Code
pyrodigal.readthedocs.org
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cyvcf2 pyrodigal
1 1
358 122
- -
7.7 8.7
2 months ago 7 days ago
Cython Cython
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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cyvcf2

Posts with mentions or reviews of cyvcf2. We have used some of these posts to build our list of alternatives and similar projects.

pyrodigal

Posts with mentions or reviews of pyrodigal. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-19.

What are some alternatives?

When comparing cyvcf2 and pyrodigal you can also consider the following projects:

htslib - C library for high-throughput sequencing data formats

Prodigal - Prodigal Gene Prediction Software

chatnoir-resiliparse - A robust web archive analytics toolkit

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

truvari - Structural variant toolkit for VCFs

orfipy - Fast and flexible ORF finder

hts.cr - HTSlib bindings for Crystal

DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.

ruby-htslib - HTSlib bindings for Ruby

pybase64 - Fast Base64 encoding/decoding in Python

Hail - Cloud-native genomic dataframes and batch computing

DNA-to-Amino-Acid-Converter - This program breaks apart a DNA string and dispalys each amino acid associated with each codon

cyvcf2 vs htslib pyrodigal vs Prodigal cyvcf2 vs chatnoir-resiliparse pyrodigal vs MultiQC cyvcf2 vs truvari pyrodigal vs orfipy cyvcf2 vs hts.cr pyrodigal vs DNA-to-Protein-sequence cyvcf2 vs ruby-htslib pyrodigal vs pybase64 cyvcf2 vs Hail pyrodigal vs DNA-to-Amino-Acid-Converter