cyvcf2
cython + htslib == fast VCF and BCF processing (by brentp)
bam-filter
Use simple expressions to filter a BAM/CRAM file (by bio-cr)
| cyvcf2 | bam-filter | |
|---|---|---|
| 1 | 1 | |
| 358 | 5 | |
| - | - | |
| 7.7 | 2.4 | |
| 2 months ago | 3 months ago | |
| Cython | C | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cyvcf2
Posts with mentions or reviews of cyvcf2.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How can I index and query my VCF files by an INFO tag?
If you in command line, bcftools. If in python, https://github.com/brentp/cyvcf2
bam-filter
Posts with mentions or reviews of bam-filter.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing cyvcf2 and bam-filter you can also consider the following projects:
pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
seqtk - Toolkit for processing sequences in FASTA/Q formats
htslib - C library for high-throughput sequencing data formats
sambamba - Tools for working with SAM/BAM data
chatnoir-resiliparse - A robust web archive analytics toolkit
truvari - Structural variant toolkit for VCFs
hts.cr - HTSlib bindings for Crystal
ruby-htslib - HTSlib bindings for Ruby
Hail - Cloud-native genomic dataframes and batch computing