cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets. (by saezlab)
enrich_omics
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc) (by saramasarone)
| cosmosR | enrich_omics | |
|---|---|---|
| 1 | 2 | |
| 53 | 17 | |
| - | - | |
| 6.3 | 3.6 | |
| 5 months ago | 2 months ago | |
| R | Python | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cosmosR
Posts with mentions or reviews of cosmosR.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Multi-omics integration and analysis tutorials
COSMOS: https://github.com/saezlab/cosmosR
enrich_omics
Posts with mentions or reviews of enrich_omics.
We have used some of these posts to build our list of alternatives
and similar projects.
- A python package to perform gene enrichment analysis (Bioinformatics/ health data science)
-
Get enrichment results in python with enrich-omics!
Here's the link to the package on Github: https://github.com/saramasarone/enrich_omics!
What are some alternatives?
When comparing cosmosR and enrich_omics you can also consider the following projects:
drugfindR - Repository holding the code for the drugfindR R package
deepchem - Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
torchdrug - A powerful and flexible machine learning platform for drug discovery
Biopython - Official git repository for Biopython (originally converted from CVS)