corona-ml
coronavirus-tracker-api
corona-ml | coronavirus-tracker-api | |
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6 | 2 | |
9 | 1,591 | |
- | - | |
7.0 | 0.0 | |
4 months ago | about 1 year ago | |
Python | Python | |
MIT License | GNU General Public License v3.0 only |
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Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
corona-ml
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France: starting January 15, the health pass will be invalid "seven months after the last injection" in the absence of a booster dose
That's incredibly hard for a layperson to do effectively. The sheer volume of information to digest is absolutely overwhelming - we're at over 250,000 papers published on covid since the start of the pandemic. It's good that we have these in the public domain, so we can check the content as a greater community effort, but we have to be careful not to let our individual efforts sway our personal judgement too far.
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[N] UK PhD Opportunity: Text mining the impact of SARS-CoV-2 mutations from the research literature at University of Glasgow
Hi, we're recruiting a PhD student to research methods for extracting the impact of SARS-CoV-2 mutations from the research literature. This builds upon our existing work on CoronaCentral (https://coronacentral.ai) and is an industry collaborative PhD with Biorelate (https://biorelate.com/). Unfortunately it is only open to UK students.
- CoronaCentral
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Analyzing the vast coronavirus literature with CoronaCentral
The SARS-CoV-2 pandemic has caused a surge in research exploring all aspects of the virus and its effects on human health. The overwhelming publication rate means that researchers are unable to keep abreast of the literature. To ameliorate this, we present the CoronaCentral resource that uses machine learning to process the research literature on SARS-CoV-2 together with SARS-CoV and MERS-CoV. We categorize the literature into useful topics and article types and enable analysis of the contents, pace, and emphasis of research during the crisis with integration of Altmetric data. These topics include therapeutics, disease forecasting, as well as growing areas such as “long COVID” and studies of inequality. This resource, available at https://coronacentral.ai, is updated daily.
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[OC] Locations from COVID publications in 2020
Locations are found in published and preprint articles from the CoronaCentral resource (https://coronacentral.ai). Locations include cities, countries, states, provinces, etc. This takes text from PubMed, preprint servers and others (including the CORD-19 dataset). Locations are extracted using synonyms pulled from Wikidata. More details are in the preprint: https://www.biorxiv.org/content/10.1101/2020.12.21.423860v1 and the code is available at: https://github.com/jakelever/corona-ml. The visualization was made using maps and gganimate in R. I found this tutorial helpful: https://d4tagirl.com/2017/05/how-to-plot-animated-maps-with-gganimate
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[OC] A year of COVID research by topic
The data is from CoronaCentral (https://coronacentral.ai). The topics are identified using a BERT-based supervised learning method. We've annotated about ~3200 articles with topics and article types and trained a classifier on them. More details are in the preprint: https://www.biorxiv.org/content/10.1101/2020.12.21.423860v1 and the code is available at: https://github.com/jakelever/corona-ml. The visualization was made using ggplot and gganimate.
coronavirus-tracker-api
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Covid cases report via GitHub action
You can pretty easy custom the workflow time when run or even information what it gets. If you want use this API but different information have a look here to learn about endpoints: https://coronavirus-tracker-api.herokuapp.com
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The agreed upon best practice for combining Python and Docker is clunky and error-prone. Here is a solution.
Here is the most popular FastAPI-based project on github: https://github.com/ExpDev07/coronavirus-tracker-api
What are some alternatives?
Coswara-Data - Data repository of Project Coswara
lost_ark_api - An Unofficial REST API for Lost Ark
fastapi_login - FastAPI-Login tries to provide similar functionality as Flask-Login does.
fastapi-redis-cache - A simple and robust caching solution for FastAPI that interprets request header values and creates proper response header values (powered by Redis)
remote - Moved to https://github.com/labmlai/labml/tree/master/remote
Fail2ban-FastAPI - FastAPI for Fail2ban with vuejs frontend for easy management
covid-19-germany-gae - COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.
gpip - gpip is a package installer for Python. You can use gpip to install packages from GitHub repositories. Avoid copy-pasting!
fastapi-azure-auth - Easy and secure implementation of Azure Entra ID (previously AD) for your FastAPI APIs đź”’ B2C, single- and multi-tenant support.
covasim - COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
random-memer - Returns random meme images scraped from Memedroid
django-currentuser - Conveniently store reference to request user on thread/db level.