bonito VS zotero

There is a technology called Nanopore. I’ve never used it myself but the concept was to be able to sequence samples of nucleic acid out in the field. A quick pubmed search indicated that it can detect miRNA, but maybe with some modifications. https://nanoporetech.com Best of luck with it!

> An unpopular opinion: there are too many other logos that look like the original logo

There are also too many logos that look like the new logo. The first blue circle logos that spring to mind are Blue Circle Cement/Tarmac/Lafarge [1] and Oxford Nanopore [2].

[1]: https://en.wikipedia.org/wiki/Tarmac_(company)

[2]: https://nanoporetech.com/

Oxford Nanopore Technologies (https://nanoporetech.com/) | Front end developer | Full-time | Oxford | Remote (UK)

Oxford Nanopore Technologies is headquartered at the Oxford Science Park outside Oxford, UK, with satellite offices and commercial presence in many global locations across the US, APAC and Europe. Our DNA/RNA sequencing platform is the only technology that offers real-time analysis (for rapid insights), in fully scalable formats from pocket to population scale. Our goal is to enable the analysis of any living thing, by anyone, anywhere.

Tech stack: Electron, Stencil, React, Typescript, RxJS, GRPC

For more details, please email: [email protected]

Ok this isn't really my area but I know that there are labs/companies performing these types of electrical current disturbance measurements of membrane-type proteins for both DNA sequencing (https://nanoporetech.com/) and protein sequencing (https://www.nature.com/articles/s41587-019-0401-y).

Now nanopore sequencing is solid state and gets much longer reads. https://nanoporetech.com/ and https://en.wikipedia.org/wiki/Nanopore_sequencing

Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.

Maybe try Zotero[1]. There are many addons which can do what you need.

[1]https://www.zotero.org/

And next time, you use a real literature management program like zotero (some university libraries offer classes, there is a r/zotero, etc) or jabref to create a proper bibtex file with the references. It is not that difficult, and keeps you sane (esp. if a paper has to be formatted for a different publisher). See e.g. learnlatex.

Zotero | Remote | Full-Time or Part-Time | https://www.zotero.org

Zotero is an open-source project that develops software to help people collect, organize, annotate, cite, and share their research. Our software is recommended by most universities and used by millions of students, scholars, scientists, and researchers worldwide.

We're looking for a JavaScript developer to work on Zotero "translators" — the pieces of code that let people click a button in their browser toolbar on any webpage and save high-quality metadata and files to their Zotero libraries. If you like web scraping, APIs, data formats, and exploring sites in the browser devtools, this would be up your alley. As a core Zotero developer, you'll also have the ability to work across Zotero's vast ecosystem and help shape the future of the project.

This is an open-ended contract role that can scale up and down in hours based on availability and workload.

https://www.zotero.org/jobs

Zotero is your answer, it even auto generates your citations.

https://www.zotero.org/

Apparently there are plugins for Logseq and Obsidian as well.

Zotero - Price: Free Free and open-source reference manager that helps you collect, organize, and cite your research sources.

I use the free and open source Zotero which I think you'd find very calibre-like and manage notes and concept linking with org-roam in emacs.

If you can't hold the urge to know, you can check on the Zotero web library if all of your things are still there

Resources: ZOTERO. Zotero is a free (you can pay to get more storage), open-source citation manager with optional browser plugins. IT WILL FORMAT CITATIONS FOR YOU. (sometimes you have to edit them, but most of the time it can pull metadata and format things correctly on its own). You can sort your references into folders or with tags, read and annotate PDF copies on your computer or in a mobile app, and make notes - which I used to keep track of specific quotations I wanted to use.

You can also use online resources like The Encyclopedia of Archaeological Sciences, that I think is mostly free or the Handbook of Archaeological Sciences which I think is also mostly free. If you can't get a hold of those things you can also email the authors/editors and they might send you a free copy or look them up on Academia.edu and see if they have a free version. Also, if you don't already, use Google Scholar, it's the best resource for finding free articles and topics to read. It's also never too early to start using something like Zotaro, Mendeley, or Endnote to keep track of your readings and help you with citations/references in papers. You can literally download the citation, import it into one of those systems and it automatically formats your referencing.