Raw nanowire sequencer data

• NanoSim

  1 213 5.6 Python

  Nanopore sequence read simulator

  

Alternatively, you can make your own data using NanoSim. I haven't used it myself yet but it generates signal level files with similar error profiles to the real thing. https://github.com/bcgsc/NanoSim

• bonito

  8 372 7.3 Python

  A PyTorch Basecaller for Oxford Nanopore Reads

  

Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

Suggest a related project