bonito
serverless-graphql
bonito | serverless-graphql | |
---|---|---|
8 | 215 | |
373 | 2,708 | |
0.0% | 0.1% | |
7.3 | 0.0 | |
5 months ago | over 1 year ago | |
Python | JavaScript | |
GNU General Public License v3.0 or later | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bonito
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miRNA Detection
There is a technology called Nanopore. Iβve never used it myself but the concept was to be able to sequence samples of nucleic acid out in the field. A quick pubmed search indicated that it can detect miRNA, but maybe with some modifications. https://nanoporetech.com Best of luck with it!
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Oxford University Pressβs new logo is unfathomably bad
> An unpopular opinion: there are too many other logos that look like the original logo
There are also too many logos that look like the new logo. The first blue circle logos that spring to mind are Blue Circle Cement/Tarmac/Lafarge [1] and Oxford Nanopore [2].
[1]: https://en.wikipedia.org/wiki/Tarmac_(company)
[2]: https://nanoporetech.com/
- PORTABLE DNA SEQUENCER!!!!
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Ask HN: Who is hiring? (May 2022)
Oxford Nanopore Technologies (https://nanoporetech.com/) | Front end developer | Full-time | Oxford | Remote (UK)
Oxford Nanopore Technologies is headquartered at the Oxford Science Park outside Oxford, UK, with satellite offices and commercial presence in many global locations across the US, APAC and Europe. Our DNA/RNA sequencing platform is the only technology that offers real-time analysis (for rapid insights), in fully scalable formats from pocket to population scale. Our goal is to enable the analysis of any living thing, by anyone, anywhere.
Tech stack: Electron, Stencil, React, Typescript, RxJS, GRPC
For more details, please email: [email protected]
- El primer genoma completo de un ser humano abre una nueva era en la ciencia
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Buying artificial membranes
Ok this isn't really my area but I know that there are labs/companies performing these types of electrical current disturbance measurements of membrane-type proteins for both DNA sequencing (https://nanoporetech.com/) and protein sequencing (https://www.nature.com/articles/s41587-019-0401-y).
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ELI5: Why home blood tests do not exist, while we can measure our sugar levels with personal devices at home?
Now nanopore sequencing is solid state and gets much longer reads. https://nanoporetech.com/ and https://en.wikipedia.org/wiki/Nanopore_sequencing
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Raw nanowire sequencer data
Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.
serverless-graphql
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Testing AWS Lambda Functions (Serverless Framework) with OpenTelemetry and Tracetest
Since then, the ecosystem has changed. Using the Serverless Framework makes deployment simpler. We released the managed Tracetest App making any serverless-based systems simpler to instrument and test. You can now test public-facing apps with no infra overhead!
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The 2024 Web Hosting Report
We see some great results from using these in conjunction with frameworks such as SST or Serverless, and also some real spaghetti from people who organically proliferate 100βs of functions over time and lose track of how they relate to each other or how to update them safely across time and service. Buyer beware!
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Deploy app to AWS by using Serverless Framework
When we think about AWS serverless service, the first thing that comes to our mind is Lambda function. Yes, the quickest way to deploy this backend Express JS app to AWS is to deploy it as a Lambda function. The easiest way is using Serverless Framework.
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Lambda Scheduling & Event Filtering with EventBridge using Serverless Framework
Serverless Framework: https://www.serverless.com/
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The Top 10 GitHub Repositories Making Waves ππ
Github | Website
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Instrumenting AWS Lambda functions with OpenTelemetry SDKs
In this example, we're using the serverless framework to quickly set up the Lambda function along with an API gateway for the entry point. The lambda function is a simple Koa REST API with a few functional endpoints.
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A Beginner's Guide to the Serverless Application Model (SAM)
Naturally, there are several options available to declare your cloud resources. The options with the most popularity are the CDK, AWS CloudFormation, SST, Serverless framework, Terraform, and AWS SAM. There are others, but when talking about Infrastructure as Code (IaC), these are the ones you hear about most often.
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π₯ The Best Serverless Framework in 2023: A Data-Driven Showdown for AWS Projects
1 - Serverless + AWS CDK + Lift: An integration that amps up the traditional Serverless Framework with Lift's static frontend construct and CDK's robust infra definition.
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Serverless Semantic Search, Free tier only
It's a bit easier in Python if you use tools like https://www.serverless.com/. I'm not sure if Rust has something similar yet.
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Trace-based Testing AWS Lambda with Tracetest, ECS Fargate, and Terraform
Serverless
What are some alternatives?
pytorch-tutorial - PyTorch Tutorial for Deep Learning Researchers
LocalStack - π» A fully functional local AWS cloud stack. Develop and test your cloud & Serverless apps offline
transformers - π€ Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Serverless-Boilerplate-Express-TypeScript - πππ Boilerplate and Starter for Serverless framework, ExpressJS, TypeScript, Prisma and MongoDB β‘οΈ Made with developer experience first: Serverless framework + Live reload + Offline support + ExpressJS + TypeScript + ESLint + Prettier + Husky + Commitlint + Lint-Staged + Jest + Dotenv + esbuild + VSCode
NanoSim - Nanopore sequence read simulator
copilot-cli - The AWS Copilot CLI is a tool for developers to build, release and operate production ready containerized applications on AWS App Runner or Amazon ECS on AWS Fargate.
fossa-cli - Fast, portable and reliable dependency analysis for any codebase. Supports license & vulnerability scanning for large monoliths. Language-agnostic; integrates with 20+ build systems.
terraform - Terraform enables you to safely and predictably create, change, and improve infrastructure. It is a source-available tool that codifies APIs into declarative configuration files that can be shared amongst team members, treated as code, edited, reviewed, and versioned.
yolov5 - YOLOv5 π in PyTorch > ONNX > CoreML > TFLite
electrodb - A DynamoDB library to ease the use of modeling complex hierarchical relationships and implementing a Single Table Design while keeping your query code readable.
pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
chalice - Python Serverless Microframework for AWS