bonito
cli
bonito | cli | |
---|---|---|
8 | 261 | |
373 | 1,641 | |
0.0% | 1.4% | |
7.3 | 9.3 | |
5 months ago | 26 days ago | |
Python | Go | |
GNU General Public License v3.0 or later | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bonito
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miRNA Detection
There is a technology called Nanopore. Iโve never used it myself but the concept was to be able to sequence samples of nucleic acid out in the field. A quick pubmed search indicated that it can detect miRNA, but maybe with some modifications. https://nanoporetech.com Best of luck with it!
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Oxford University Pressโs new logo is unfathomably bad
> An unpopular opinion: there are too many other logos that look like the original logo
There are also too many logos that look like the new logo. The first blue circle logos that spring to mind are Blue Circle Cement/Tarmac/Lafarge [1] and Oxford Nanopore [2].
[1]: https://en.wikipedia.org/wiki/Tarmac_(company)
[2]: https://nanoporetech.com/
- PORTABLE DNA SEQUENCER!!!!
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Ask HN: Who is hiring? (May 2022)
Oxford Nanopore Technologies (https://nanoporetech.com/) | Front end developer | Full-time | Oxford | Remote (UK)
Oxford Nanopore Technologies is headquartered at the Oxford Science Park outside Oxford, UK, with satellite offices and commercial presence in many global locations across the US, APAC and Europe. Our DNA/RNA sequencing platform is the only technology that offers real-time analysis (for rapid insights), in fully scalable formats from pocket to population scale. Our goal is to enable the analysis of any living thing, by anyone, anywhere.
Tech stack: Electron, Stencil, React, Typescript, RxJS, GRPC
For more details, please email: [email protected]
- El primer genoma completo de un ser humano abre una nueva era en la ciencia
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Buying artificial membranes
Ok this isn't really my area but I know that there are labs/companies performing these types of electrical current disturbance measurements of membrane-type proteins for both DNA sequencing (https://nanoporetech.com/) and protein sequencing (https://www.nature.com/articles/s41587-019-0401-y).
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ELI5: Why home blood tests do not exist, while we can measure our sugar levels with personal devices at home?
Now nanopore sequencing is solid state and gets much longer reads. https://nanoporetech.com/ and https://en.wikipedia.org/wiki/Nanopore_sequencing
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Raw nanowire sequencer data
Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.
cli
- DNS traffic can leak outside the VPN tunnel on Android
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Fetch Geo Data from any IP Address in React
You need an access token from ipinfo to access their API. Go to ipinfo.io and sign up for an account. After signing up, you'll get an access token. Keep it handy as we'll need it in the next step.
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Prodzilla: From Zero to Prod with Rust and Shuttle
stories: - name: get-ip-info steps: - name: get-ip url: https://api.ipify.org/?format=json http_method: GET - name: get-location url: https://ipinfo.io/${{steps.get-ip.response.body.ip}}/geo http_method: GET expectations: - field: Body operation: Contains value: "Australia" schedule: initial_delay: 10 interval: 60 alerts: - url: https://my.site/notify
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Free tools for developers to build their apps
3- IPinfo
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Live proxy and VPN detection
Mullvad VPN location set to Frankfurt germany
Using the us east test server:
Proxy Score: 10/100 - Very likely not a Proxy
VPN Score: 0/55 - Very likely not a VPN
Using german test server:
Proxy Score: 10/100 - Very likely not a Proxy
VPN Score: 30/55 - Very likely a VPN
The thing that changed between both tests was the flow latencies vs ping latencies check. Clicking on more info it said: "flow variance too large in relation to avg flow: 0.6937484181219945"
I guess it works kinda, but not very consistent.
But e.g. https://ipinfo.io/ reveals immediately that this IP is a VPN IP address.
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Please help me to setup nordvpn on my router
If it's a work computer it may be connecting to it's own VPN automatically. If you go to a site like https://ipinfo.io/ do you recognize the external IP address, region, and org?
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PECKER BURST - PING - SERVER issues fix!
Then just check IP of the server when ping is high for you, put IP in https://ipinfo.io/, and block range for all other servers in same datacenter.
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Configuration Proxy Helper Chrome Extension with Okey Proxy
3. Check the IP address information by ipinfo.io, and confirm the IP location information is right with okeyproxy's we pasted into ProxyHelper.
- AIUTO! Chrome crede che io sia giapponese!
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Ask HN: Who is hiring? (December 2023)
IPinfo.io | Various Roles | Remote (Anywhere) | Fulltime / Contract | https://ipinfo.io
IPinfo is a leading provider of IP address data. Our API handles almost 100 billion requests a month, and we also license our data for use in many products and services you might have used. We started as a side project back in 2013, offering a free geolocation API, and we've since bootstrapped ourselves to a profitable business with a global team of over 20, and grown our data offerings to include geolocation, IP to company, carrier detection, and VPN detection. Our customers include T-Mobile, Nike, DataDog, DemandBase, Clearbit and many more.
We're looking for exceptional and ambitious people to join our team. The main role we're hiring for currently is a Product Manager - ideally with SaaS/DaaS experience, and a technical understanding of our products / services. Apply here: https://ipinfo.bamboohr.com/careers/45?source=aWQ9Mjg%3D
We're always on the look out to strong software or data engineers with an internet measuremenet / analysis background to join our team too. Any questions about the roles or IPinfo feel free to reach out to me directly at [email protected]
What are some alternatives?
pytorch-tutorial - PyTorch Tutorial for Deep Learning Researchers
murder - Large scale server deploys using BitTorrent and the BitTornado library
transformers - ๐ค Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
gluetun - VPN client in a thin Docker container for multiple VPN providers, written in Go, and using OpenVPN or Wireguard, DNS over TLS, with a few proxy servers built-in.
NanoSim - Nanopore sequence read simulator
canarytokens - Canarytokens helps track activity and actions on your network.
fossa-cli - Fast, portable and reliable dependency analysis for any codebase. Supports license & vulnerability scanning for large monoliths. Language-agnostic; integrates with 20+ build systems.
ExpansionCards - Reference designs and documentation to create Expansion Cards for the Framework Laptop
yolov5 - YOLOv5 ๐ in PyTorch > ONNX > CoreML > TFLite
glow - Render markdown on the CLI, with pizzazz! ๐ ๐ป
pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
anvil-runtime - The runtime engine for hosting Anvil web apps