bonito VS cli

Compare bonito vs cli and see what are their differences.

bonito

A PyTorch Basecaller for Oxford Nanopore Reads (by nanoporetech)

cli

Official Command Line Interface for the IPinfo API (IP geolocation and other types of IP data) (by ipinfo)
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bonito cli
8 261
373 1,641
0.0% 1.4%
7.3 9.3
5 months ago 26 days ago
Python Go
GNU General Public License v3.0 or later Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bonito

Posts with mentions or reviews of bonito. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-05-02.
  • miRNA Detection
    1 project | /r/biotechnology | 13 Nov 2022
    There is a technology called Nanopore. Iโ€™ve never used it myself but the concept was to be able to sequence samples of nucleic acid out in the field. A quick pubmed search indicated that it can detect miRNA, but maybe with some modifications. https://nanoporetech.com Best of luck with it!
  • Oxford University Pressโ€™s new logo is unfathomably bad
    1 project | news.ycombinator.com | 10 Nov 2022
    > An unpopular opinion: there are too many other logos that look like the original logo

    There are also too many logos that look like the new logo. The first blue circle logos that spring to mind are Blue Circle Cement/Tarmac/Lafarge [1] and Oxford Nanopore [2].

    [1]: https://en.wikipedia.org/wiki/Tarmac_(company)

    [2]: https://nanoporetech.com/

  • PORTABLE DNA SEQUENCER!!!!
    1 project | /r/genetics | 10 Aug 2022
  • Ask HN: Who is hiring? (May 2022)
    23 projects | news.ycombinator.com | 2 May 2022
    Oxford Nanopore Technologies (https://nanoporetech.com/) | Front end developer | Full-time | Oxford | Remote (UK)

    Oxford Nanopore Technologies is headquartered at the Oxford Science Park outside Oxford, UK, with satellite offices and commercial presence in many global locations across the US, APAC and Europe. Our DNA/RNA sequencing platform is the only technology that offers real-time analysis (for rapid insights), in fully scalable formats from pocket to population scale. Our goal is to enable the analysis of any living thing, by anyone, anywhere.

    Tech stack: Electron, Stencil, React, Typescript, RxJS, GRPC

    For more details, please email: [email protected]

  • El primer genoma completo de un ser humano abre una nueva era en la ciencia
    1 project | /r/brasilnoticias | 31 Mar 2022
  • Buying artificial membranes
    1 project | /r/SyntheticBiology | 12 Jan 2022
    Ok this isn't really my area but I know that there are labs/companies performing these types of electrical current disturbance measurements of membrane-type proteins for both DNA sequencing (https://nanoporetech.com/) and protein sequencing (https://www.nature.com/articles/s41587-019-0401-y).
  • ELI5: Why home blood tests do not exist, while we can measure our sugar levels with personal devices at home?
    1 project | /r/explainlikeimfive | 7 Jan 2022
    Now nanopore sequencing is solid state and gets much longer reads. https://nanoporetech.com/ and https://en.wikipedia.org/wiki/Nanopore_sequencing
  • Raw nanowire sequencer data
    2 projects | /r/bioinformatics | 26 Jun 2021
    Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.

cli

Posts with mentions or reviews of cli. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-05-03.
  • DNS traffic can leak outside the VPN tunnel on Android
    2 projects | news.ycombinator.com | 3 May 2024
  • Fetch Geo Data from any IP Address in React
    1 project | dev.to | 13 Mar 2024
    You need an access token from ipinfo to access their API. Go to ipinfo.io and sign up for an account. After signing up, you'll get an access token. Keep it handy as we'll need it in the next step.
  • Prodzilla: From Zero to Prod with Rust and Shuttle
    6 projects | dev.to | 21 Feb 2024
    stories: - name: get-ip-info steps: - name: get-ip url: https://api.ipify.org/?format=json http_method: GET - name: get-location url: https://ipinfo.io/${{steps.get-ip.response.body.ip}}/geo http_method: GET expectations: - field: Body operation: Contains value: "Australia" schedule: initial_delay: 10 interval: 60 alerts: - url: https://my.site/notify
  • Free tools for developers to build their apps
    4 projects | dev.to | 5 Jan 2024
    3- IPinfo
  • Live proxy and VPN detection
    1 project | news.ycombinator.com | 31 Dec 2023
    Mullvad VPN location set to Frankfurt germany

    Using the us east test server:

    Proxy Score: 10/100 - Very likely not a Proxy

    VPN Score: 0/55 - Very likely not a VPN

    Using german test server:

    Proxy Score: 10/100 - Very likely not a Proxy

    VPN Score: 30/55 - Very likely a VPN

    The thing that changed between both tests was the flow latencies vs ping latencies check. Clicking on more info it said: "flow variance too large in relation to avg flow: 0.6937484181219945"

    I guess it works kinda, but not very consistent.

    But e.g. https://ipinfo.io/ reveals immediately that this IP is a VPN IP address.

  • Please help me to setup nordvpn on my router
    1 project | /r/nordvpn | 11 Dec 2023
    If it's a work computer it may be connecting to it's own VPN automatically. If you go to a site like https://ipinfo.io/ do you recognize the external IP address, region, and org?
  • PECKER BURST - PING - SERVER issues fix!
    2 projects | /r/ModernWarfareIII | 9 Dec 2023
    Then just check IP of the server when ping is high for you, put IP in https://ipinfo.io/, and block range for all other servers in same datacenter.
  • Configuration Proxy Helper Chrome Extension with Okey Proxy
    1 project | /r/u_OkeyProxy | 8 Dec 2023
    3. Check the IP address information by ipinfo.io, and confirm the IP location information is right with okeyproxy's we pasted into ProxyHelper.
  • AIUTO! Chrome crede che io sia giapponese!
    2 projects | /r/Italia | 7 Dec 2023
  • Ask HN: Who is hiring? (December 2023)
    17 projects | news.ycombinator.com | 1 Dec 2023
    IPinfo.io | Various Roles | Remote (Anywhere) | Fulltime / Contract | https://ipinfo.io

    IPinfo is a leading provider of IP address data. Our API handles almost 100 billion requests a month, and we also license our data for use in many products and services you might have used. We started as a side project back in 2013, offering a free geolocation API, and we've since bootstrapped ourselves to a profitable business with a global team of over 20, and grown our data offerings to include geolocation, IP to company, carrier detection, and VPN detection. Our customers include T-Mobile, Nike, DataDog, DemandBase, Clearbit and many more.

    We're looking for exceptional and ambitious people to join our team. The main role we're hiring for currently is a Product Manager - ideally with SaaS/DaaS experience, and a technical understanding of our products / services. Apply here: https://ipinfo.bamboohr.com/careers/45?source=aWQ9Mjg%3D

    We're always on the look out to strong software or data engineers with an internet measuremenet / analysis background to join our team too. Any questions about the roles or IPinfo feel free to reach out to me directly at [email protected]

What are some alternatives?

When comparing bonito and cli you can also consider the following projects:

pytorch-tutorial - PyTorch Tutorial for Deep Learning Researchers

murder - Large scale server deploys using BitTorrent and the BitTornado library

transformers - ๐Ÿค— Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

gluetun - VPN client in a thin Docker container for multiple VPN providers, written in Go, and using OpenVPN or Wireguard, DNS over TLS, with a few proxy servers built-in.

NanoSim - Nanopore sequence read simulator

canarytokens - Canarytokens helps track activity and actions on your network.

fossa-cli - Fast, portable and reliable dependency analysis for any codebase. Supports license & vulnerability scanning for large monoliths. Language-agnostic; integrates with 20+ build systems.

ExpansionCards - Reference designs and documentation to create Expansion Cards for the Framework Laptop

yolov5 - YOLOv5 ๐Ÿš€ in PyTorch > ONNX > CoreML > TFLite

glow - Render markdown on the CLI, with pizzazz! ๐Ÿ’…๐Ÿป

pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

anvil-runtime - The runtime engine for hosting Anvil web apps