bonito
conductor
bonito | conductor | |
---|---|---|
8 | 39 | |
373 | 12,999 | |
0.0% | - | |
7.3 | 8.4 | |
5 months ago | 5 months ago | |
Python | Java | |
GNU General Public License v3.0 or later | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bonito
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miRNA Detection
There is a technology called Nanopore. I’ve never used it myself but the concept was to be able to sequence samples of nucleic acid out in the field. A quick pubmed search indicated that it can detect miRNA, but maybe with some modifications. https://nanoporetech.com Best of luck with it!
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Oxford University Press’s new logo is unfathomably bad
> An unpopular opinion: there are too many other logos that look like the original logo
There are also too many logos that look like the new logo. The first blue circle logos that spring to mind are Blue Circle Cement/Tarmac/Lafarge [1] and Oxford Nanopore [2].
[1]: https://en.wikipedia.org/wiki/Tarmac_(company)
[2]: https://nanoporetech.com/
- PORTABLE DNA SEQUENCER!!!!
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Ask HN: Who is hiring? (May 2022)
Oxford Nanopore Technologies (https://nanoporetech.com/) | Front end developer | Full-time | Oxford | Remote (UK)
Oxford Nanopore Technologies is headquartered at the Oxford Science Park outside Oxford, UK, with satellite offices and commercial presence in many global locations across the US, APAC and Europe. Our DNA/RNA sequencing platform is the only technology that offers real-time analysis (for rapid insights), in fully scalable formats from pocket to population scale. Our goal is to enable the analysis of any living thing, by anyone, anywhere.
Tech stack: Electron, Stencil, React, Typescript, RxJS, GRPC
For more details, please email: [email protected]
- El primer genoma completo de un ser humano abre una nueva era en la ciencia
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Buying artificial membranes
Ok this isn't really my area but I know that there are labs/companies performing these types of electrical current disturbance measurements of membrane-type proteins for both DNA sequencing (https://nanoporetech.com/) and protein sequencing (https://www.nature.com/articles/s41587-019-0401-y).
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ELI5: Why home blood tests do not exist, while we can measure our sugar levels with personal devices at home?
Now nanopore sequencing is solid state and gets much longer reads. https://nanoporetech.com/ and https://en.wikipedia.org/wiki/Nanopore_sequencing
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Raw nanowire sequencer data
Also best of luck with the basecaller, I will say that the latest guppy versions are very good, both in terms of accuracy and speed, as they are GPU accelerated and the best I've seen in accuracy. You may also be interested in Bonito, a tool to generate your own GPU basecalling model or tweak existing models to your data. https://github.com/nanoporetech/bonito.
conductor
- Netflix Conductor OSS discontinued support
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Orkes Monthly Highlights - October 2023
We celebrated a remarkable milestone in September when the Netflix Conductor GitHub repository reached 10k stars. It was a momentous achievement for our DevRel team. Just a month later, we're thrilled to announce that we've surpassed 12k stars! ⭐🎉
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4 Microservice Patterns Crucial in Microservices Architecture
Also, don’t forget to give us a ⭐ on our Netflix Conductor repo.
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The Workflow Pattern
One of my favorite workflow engines that has a really simple way to do things was not listed here, so I'll call it out - Netflix Conductor (https://github.com/Netflix/conductor).
Its capabilities comes to light when you model really complex workflows and one real value is how its all very visual not just during modeling but when running it. The history remains visible and you can even see how the whole flow evolved.
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Orkes Monthly Highlights - September 2023
Yet another significant milestone on our journey: we've proudly reached the 10,000-star mark on our Netflix Conductor GitHub repository! 🌟
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question about microservice to microservice internal only communication
Give something like https://github.com/Netflix/conductor a try to solve this -- makes it very easy to do what you are trying to achieve.
- Framework used by Netflix to orchestrate microservices
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Background Task Management on Celery and EC2
Checkout Conductor https://github.com/Netflix/conductor which is far more scalable and easy on the resources with its own Celery like queues. Fully supports writing task workers in python:
- Implementing Saga Pattern in Go Microservices
- GitHub - Netflix/conductor: Microservices orchestration engine.
What are some alternatives?
pytorch-tutorial - PyTorch Tutorial for Deep Learning Researchers
camunda-demo - 🗞️ Repo for this series: https://dev.to/tgotwig/getting-started-with-camunda-spring-boot-2gbi
transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Activiti - Activiti is a light-weight workflow and Business Process Management (BPM) Platform targeted at business people, developers and system admins. Its core is a super-fast and rock-solid BPMN 2 process engine for Java. It's open-source and distributed under the Apache license. Activiti runs in any Java application, on a server, on a cluster or in the cloud. It integrates perfectly with Spring, it is extremely lightweight and based on simple concepts.
NanoSim - Nanopore sequence read simulator
kestra - Infinitely scalable, event-driven, language-agnostic orchestration and scheduling platform to manage millions of workflows declaratively in code.
fossa-cli - Fast, portable and reliable dependency analysis for any codebase. Supports license & vulnerability scanning for large monoliths. Language-agnostic; integrates with 20+ build systems.
proposals - Temporal proposals
yolov5 - YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite
akhq - Kafka GUI for Apache Kafka to manage topics, topics data, consumers group, schema registry, connect and more...
pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Springy-Store-Microservices - Springy Store is a conceptual simple μServices-based project using the latest cutting-edge technologies, to demonstrate how the Store services are created to be a cloud-native and 12-factor app agnostic. Those μServices are developed based on Spring Boot & Cloud framework that implements cloud-native intuitive, design patterns, and best practices.