awesome-single-cell VS scDblFinder

Compare awesome-single-cell vs scDblFinder and see what are their differences.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. (by seandavi)
rna-seq-data gene-expression scrna-seq-data Bioinformatics awesome-list dimensionality-reduction cell-cycle atac-seq Analysis cell-differentiation Python Clustering cell-populations gene-expression-profiles rna-seq-experiments cell-clusters analysis-pipeline data-integration Data Visualization single-cell
Source Code
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scDblFinder

Methods for detecting doublets in single-cell sequencing data (by plger)
single-cell doublets
Source Code
plger.github.io
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awesome-single-cell scDblFinder
3 1
2,927 133
- -
5.2 6.7
about 2 months ago about 2 months ago
R
MIT License GNU General Public License v3.0 only
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awesome-single-cell

Posts with mentions or reviews of awesome-single-cell. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-08-21.

scDblFinder

Posts with mentions or reviews of scDblFinder. We have used some of these posts to build our list of alternatives and similar projects.
  • Are there any methods for doublet deconvolution?
    1 project | /r/bioinformatics | 10 May 2022
    The scDblFinder method identifies doublets by combining singlet profiles to generate artificial doublets, then finding the nearest neighbors to those artificial profiles. You could use this approach to deconvolve your doublets, inferring that the two cells in the actual observed doublet are of the same cell types as those used to generate the nearest artificial doublet profile.

What are some alternatives?

When comparing awesome-single-cell and scDblFinder you can also consider the following projects:

cellsnp-lite - Efficient genotyping bi-allelic SNPs on single cells

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

Baltica - Baltica: integrated differential junction usage

Awesome-Bioinformatics - A curated list of awesome Bioinformatics libraries and software.

DGE_workshop

awesome-single-cell vs cellsnp-lite awesome-single-cell vs MultiQC awesome-single-cell vs Baltica awesome-single-cell vs Awesome-Bioinformatics awesome-single-cell vs DGE_workshop