scDblFinder

Methods for detecting doublets in single-cell sequencing data (by plger)

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  • Are there any methods for doublet deconvolution?
    1 project | /r/bioinformatics | 10 May 2022
    The scDblFinder method identifies doublets by combining singlet profiles to generate artificial doublets, then finding the nearest neighbors to those artificial profiles. You could use this approach to deconvolve your doublets, inferring that the two cells in the actual observed doublet are of the same cell types as those used to generate the nearest artificial doublet profile.

Stats

Basic scDblFinder repo stats
1
133
6.7
about 2 months ago

plger/scDblFinder is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.

The primary programming language of scDblFinder is R.


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