adam
asdf
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| adam | asdf | |
|---|---|---|
| 3 | 4 | |
| 967 | 505 | |
| 0.1% | 1.6% | |
| 6.1 | 9.4 | |
| about 1 month ago | 20 days ago | |
| Scala | Python | |
| Apache License 2.0 | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
adam
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biobear -- python package with minimal dependencies for bioinformatic file parsing and querying using rust and polars as the backend
FYI: ADAM seems to do that
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Advanced Scientific Data Format
We presented using Parquet formats for bioinformatics 2012/13-ish at the Bioinformatics Open Source Conference (BOSC) and got laughed out of the place.
While using Apache Spark for bioinformatics [0] never really took off, I still think Parquet formats for bioinformatics [1] is a good idea, especially with DuckDB, Apache Arrow, etc. supporting Parquet out of the box.
0 - https://github.com/bigdatagenomics/adam
1 - https://github.com/bigdatagenomics/bdg-formats
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Seq: A programming language for high-performance computational genomics
We're here, still plugging along.
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
https://github.com/bigdatagenomics/adam
asdf
- Advanced Scientific Data Format
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Asdf – An Extendable Version Manager
Not the Advanced Scientific Data Format either.
https://github.com/asdf-format/asdf
What are some alternatives?
seq - A high-performance, Pythonic language for bioinformatics
asdf-postgres - asdf plugin for Postgres
bioconda-recipes - Conda recipes for the bioconda channel.
n-install - Installs n, the Node.js version manager, without needing to install Node.js first: curl -L https://bit.ly/n-install | bash
nimconf2021 - Slides for Nimconf21
asdf - k14s asdf plugin
cramino - A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
gitlab-development-kit
uvfs - Microscopic C++20 archive format
asdf-erlang - Erlang plugin for asdf version manager
sito - sito: A serialization suite