Scala Bioinformatics

Open-source Scala projects categorized as Bioinformatics
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Topics: Scala Big Data Cloud Containers Avro
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Scala Bioinformatic Projects

  • adam

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

  • cromwell

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    • Project mention: I have decided to connect my future with Scala (if possible), need little advice | /r/scala | 2023-05-22

    What about https://github.com/broadinstitute/cromwell ?

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

Project Stars
1 adam 967
2 cromwell 958

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