UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al.. (by hms-dbmi)
patchwork
The Composer of ggplots (by thomasp85)
| UpSetR | patchwork | |
|---|---|---|
| 4 | 7 | |
| 752 | 2,462 | |
| 0.4% | - | |
| 0.0 | 8.5 | |
| 2 months ago | 21 days ago | |
| R | R | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
UpSetR
Posts with mentions or reviews of UpSetR.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-05.
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Visually interesting pathway analysis?
Another package for Upset is UpSetR:: A shiny app is also available online. Complete info us available in their GitHub page.
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How does one create this kind of figure?
Those are good for up to 3 ~4 distinct groups but more than that you should take a peek at upset plots here
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Upset plots in Plotly/Dash?
Want this type of plot: https://github.com/hms-dbmi/UpSetR
- How might you display overlapping binary data other than a Venn diagram?
patchwork
Posts with mentions or reviews of patchwork.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-19.
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What is your favorite piece if Technogy or R package which you wish you would have discovered earlier ?
patchwork and ggrepel
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What is this chart type called? I’d like to recreate something similar in ggplot but I’m not sure what to Google for the code. Thanks guys
3 waffle charts, patched together with patchwork https://patchwork.data-imaginist.com/
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Dynamic subplot layout on Jupyter-lab
Here, I developed patchworklib that allows users to arrange subplots dynamically and determine the best layout from the multiple layouts. Patchworklib is inspired by patchwork library for R ggplot2, so it enables designing subplot layouts with only / and | operators.
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Pathcworklib: A subplot manager for intuitive layout in matplotlib
So, I developed patchworklib inspired by the patchwork library for R. With patchwroklib, after creating individual plots, you can quickly design multiple layouts combining them and select the best one among them.
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How to combine multiple figures together into one larger figure? What package is good for this?
There https://patchwork.data-imaginist.com
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Quick Tutorial: How to Create Side-by-Side Plots in ggplot2
The author of patchwork offers some justification for the package here compared to other R packages that facilitate the plotting of ggplot objects (e.g., gridExtra, cowplot). The syntax appears to be simpler than creating matrices to specify layouts as in gridExtra, but the examples given on the GitHub page don't really demonstrate how the package deals with the more complex layouts that are possible in gridExtra.
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Has anyone ever "tied" two graphs together in R?
Try the patchwork package which lets you glue graphs together. Amazing stuff!
What are some alternatives?
When comparing UpSetR and patchwork you can also consider the following projects:
complex-upset - A library for creating complex UpSet plots with ggplot2 geoms
echarts4r - 🐳 ECharts 5 for R
ggvenn - Venn Diagram by ggplot2, with really easy-to-use API.
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
circlize - Circular visualization in R
gganimate - A Grammar of Animated Graphics
ggsignif - Easily add significance brackets to your ggplots
layer - Create stacked tilted maps
ganttrify - Create beautiful Gantt charts with ggplot2
votemapswitzerland - A Swiss version of the famous visualization «Land doesn't vote, people do.»