StrayVisualizer
carveme
| StrayVisualizer | carveme | |
|---|---|---|
| 1 | 2 | |
| 61 | 138 | |
| - | - | |
| 0.0 | 5.0 | |
| over 1 year ago | 2 months ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 or later |
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StrayVisualizer
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Collecting RGB-D Datasets on LiDAR Enabled iOS devices
I posted a couple datasets here https://github.com/kekeblom/StrayVisualizer
carveme
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Advice on how to go about genome scale metabolic model construction
Carveme: https://academic.oup.com/nar/article/46/15/7542/5042022 https://github.com/cdanielmachado/carveme https://carveme.readthedocs.io/en/latest/usage.html
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metaGEM: create your own genome scale metabolic models directly from metagenomes
Thanks sharing, I believe I have seen the github repo/paper before! Looks very interesting, I wonder if mantis could be used for expanding the functional annotation of sequences in the BiGG database (paper). This is the database that is used by CarveMe (paper) for building metabolic models from protein fasta files within the metaGEM workflow. I believe that CarveMe does not actually use the annotations themselves, but simply aligns sequences in a fasta file to the BiGG database, which contains associations between sequences -> genes -> reactions -> metabolites.
What are some alternatives?
Photogrammetry-Guide - Photogrammetry Guide. Photogrammetry is widely used for Aerial surveying, Agriculture, Architecture, 3D Games, Robotics, Archaeology, Construction, Emergency management, and Medical.
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
PyDBoW - Python Implementation of Bags of Binary Words
ancient-microbiome-denovo
slam-python - SLAM - Simultaneous localization and mapping using OpenCV and NumPy.
DECA - DECA: Detailed Expression Capture and Animation (SIGGRAPH 2021)
stereoDepth - single and stereo calibration, disparity calculation.
embl_gems - EMBL GEMs: A collection of GEnome-scale Models for bacterial species
analog-watch-recognition - Reading time from analog clocks
deepdiff - DeepDiff: Deep Difference and search of any Python object/data. DeepHash: Hash of any object based on its contents. Delta: Use deltas to reconstruct objects by adding deltas together.
Open3D-PointNet - Open3D PointNet implementation with PyTorch