RNA-seq-analysis
zarp
| RNA-seq-analysis | zarp | |
|---|---|---|
| 1 | 1 | |
| 840 | 29 | |
| - | - | |
| 0.0 | 7.2 | |
| over 2 years ago | 3 months ago | |
| Python | Python | |
| MIT License | Apache License 2.0 |
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RNA-seq-analysis
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Looking for advice regarding R-programming and data analysis for immunology/biology projects
One github user crazyhottommy has repositories that cover multiple tools related to several sequencing experiments also including RNA-seq. Really good stuff https://github.com/crazyhottommy/RNA-seq-analysis
zarp
What are some alternatives?
COVID-19-RNA-Seq-datasets - A repository for sharing information on available COVID-19 RNA-Seq datasets
atlas - ATLAS - Three commands to start analyzing your metagenome data
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
bioawk - BWK awk modified for biological data
R-graph-gallery - A website that displays hundreds of R charts with their code
sv-callers - Snakemake-based workflow for detecting structural variants in genomic data
rnaseq - RNA-seq analyses.
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
GermlineMutationCalling - An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
PyDESeq2 - A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.