OSGenome
Structure_threader
OSGenome | Structure_threader | |
---|---|---|
2 | 1 | |
107 | 24 | |
- | - | |
3.2 | 3.3 | |
3 months ago | 10 months ago | |
Python | Python | |
GNU General Public License v3.0 only | GNU General Public License v3.0 only |
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OSGenome
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How to get a DNA report using AncestryDNA/23andme raw data without uploading to another server?
I think OSGenome by u/Sweet-Sir-10 would do the trick.
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OSGenome shows a bad genotype combination, while Promethease says differently
So, I have done 23andme test, which only has Ancestry+Traits available for my country. To get the health data, I've downloaded my raw data from 23andme and first ran it through OSGenome: https://github.com/mentatpsi/OSGenome
Structure_threader
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Two ways to parallelize STRUCTURE
There is also structure_threader which works amazingly for me (Github Link)
What are some alternatives?
bioinformatics - Bioinformatic algorithms for the UCLA Bioinformatics Specialization
directory-structure - :package: Print a directory tree structure in your Python code.
snappy - Helps you browse through and interpret your genotype data
causal-learn - Causal Discovery in Python. It also includes (conditional) independence tests and score functions.
Genetic-Trait-Detector - This python script detects known traits in raw human genetic data.
flask - The Python micro framework for building web applications. [Moved to: https://github.com/pallets/flask]
Flask - The Python micro framework for building web applications.
BlackOps4Shop - Just a repo to store the elements in the store of the Call of Duty: Black Ops 4 black market
Hail - Cloud-native genomic dataframes and batch computing