NanoSim
Nanopore sequence read simulator (by bcgsc)
pepper
PEPPER-Margin-DeepVariant (by kishwarshafin)
Our great sponsors
| NanoSim | pepper | |
|---|---|---|
| 1 | 1 | |
| 213 | 231 | |
| 3.3% | - | |
| 5.6 | 0.0 | |
| about 2 months ago | 4 months ago | |
| Python | Python | |
| GNU General Public License v3.0 or later | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
NanoSim
Posts with mentions or reviews of NanoSim.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-06-26.
-
Raw nanowire sequencer data
Alternatively, you can make your own data using NanoSim. I haven't used it myself yet but it generates signal level files with similar error profiles to the real thing. https://github.com/bcgsc/NanoSim
pepper
Posts with mentions or reviews of pepper.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing NanoSim and pepper you can also consider the following projects:
bonito - A PyTorch Basecaller for Oxford Nanopore Reads
Clairvoyante - Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
bioinformatics - Bioinformatic algorithms for the UCLA Bioinformatics Specialization
pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data