GAAS
atlas
GAAS | atlas | |
---|---|---|
1 | 2 | |
195 | 348 | |
-0.5% | 1.2% | |
2.6 | 8.9 | |
5 months ago | 14 days ago | |
Perl | Python | |
GNU General Public License v3.0 only | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
GAAS
-
How to download the GTF file for my organism from NCBI? (using featureCounts to obtain gene count data from reads)
In fact someone has done a review of the main conversion tools here.
atlas
- Resources to learn genetic data manipulation basics?
-
Is it possible to calculate relative abundance of microorganisms in a community through shotgun-metagenomics?
You might want to check Atlas, an assembly/binning based pipeline for metagenomics data Publication Github
What are some alternatives?
Utilities - Useful things
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
learn-anything.xyz - Organize world's knowledge, explore connections and curate learning paths
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
zarp - The Zavolab Automated RNA-seq Pipeline
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
eggnog-mapper - Fast genome-wide functional annotation through orthology assignment
bioinformatics - :microscope: Path to a free self-taught education in Bioinformatics!
biopython-coronavirus - Biopython Jupyter Notebook tutorial to characterize a small genome