drep VS aviary

Compare drep vs aviary and see what are their differences.

drep

Rapid comparison and dereplication of genomes (by MrOlm)
Bioinformatics metagenomics microbiology Assembly microbial-genomes
Source Code
Suggest alternative
Edit details

aviary

A hybrid assembly and MAG recovery pipeline (and more!) (by rhysnewell)
Assembly binning Bioinformatics metagenomics Workflow
Source Code
Suggest alternative
Edit details
InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured
drep aviary
1 3
237 67
- -
3.9 9.0
about 2 months ago 3 days ago
Python Python
- GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

drep

Posts with mentions or reviews of drep. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-07-25.
  • How to dereplicate MAGs? (metagenome assembly genomes)
    2 projects | /r/bioinformatics | 25 Jul 2021
    You should look at https://github.com/MrOlm/drep . Thats exactly the tool you need. Usually one takes all their bins and dereplicates them at 99% ANI for strain level dereplication or 95% at species level. For preserving the best quality, you would need to check yourself if the best genome survived the dereplication afaik. You probably want some sort of quality score and chose the one with the highest score out of the bins that got grouped as one by dereplication.

aviary

Posts with mentions or reviews of aviary. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-12.

What are some alternatives?

When comparing drep and aviary you can also consider the following projects:

DAS_Tool - DAS Tool

metaWRAP - MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

SqueezeMeta - A complete pipeline for metagenomic analysis

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

covid-19-signal - Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

masurca

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

sv-callers - Snakemake-based workflow for detecting structural variants in genomic data

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

drep vs DAS_Tool aviary vs metaWRAP drep vs SqueezeMeta aviary vs metaGEM drep vs covid-19-signal aviary vs masurca drep vs kraken-biom aviary vs sv-callers drep vs phantasm drep vs masurca