FastaParser
pyfaidx
| FastaParser | pyfaidx | |
|---|---|---|
| 1 | 1 | |
| 17 | 440 | |
| - | - | |
| 4.4 | 6.0 | |
| over 1 year ago | 15 days ago | |
| Python | Python | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 or later |
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FastaParser
pyfaidx
-
Can anyone recommend notable examples of simple python projects with unit tests?
My package for indexing FASTA files has some extensive tests. Every time someone raised an issue I’d write a test to reproduce the issue and add it after I fix the code. This way I can test for regressions. https://github.com/mdshw5/pyfaidx
What are some alternatives?
vermin - Concurrently detect the minimum Python versions needed to run code
Biopython - Official git repository for Biopython (originally converted from CVS)
PyInstaller - Freeze (package) Python programs into stand-alone executables
biowasm - WebAssembly modules for genomics
pillow - Python Imaging Library (Fork)
ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers
BorgBackup - Deduplicating archiver with compression and authenticated encryption.
reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database
pyparsing - Python library for creating PEG parsers [Moved to: https://github.com/pyparsing/pyparsing]
sublime_text - Issue tracker for Sublime Text
CSIS - Code Safety Inspection Service
biomisc - collection of miscellaneous command line bioinformatic scripts