16SMaRT VS deepvariant

Compare 16SMaRT vs deepvariant and see what are their differences.

16SMaRT

16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur). (by achillesrasquinha)
16s-rrna meta-analysis Python mothur sequencing Bioinformatics reproducible-research
Source Code
Suggest alternative
Edit details

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
Tensorflow deep-neural-network Genomics Science Dna sequencing Genome Bioinformatics Deep Learning ngs deepvariant Machine Learning
Source Code
Suggest alternative
Edit details
InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured
16SMaRT deepvariant
3 5
7 3,085
- 1.2%
0.0 9.1
over 1 year ago about 2 months ago
Python Python
MIT License BSD 3-clause "New" or "Revised" License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

16SMaRT

Posts with mentions or reviews of 16SMaRT. We have used some of these posts to build our list of alternatives and similar projects.

deepvariant

Posts with mentions or reviews of deepvariant. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-05-06.

What are some alternatives?

When comparing 16SMaRT and deepvariant you can also consider the following projects:

covid-19-signal - Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

galaxy - Data intensive science for everyone.

ariba - Antimicrobial Resistance Identification By Assembly

masurca

hgvs - Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

scanpy - Single-cell analysis in Python. Scales to >1M cells.

metaflow - :rocket: Build and manage real-life ML, AI, and data science projects with ease!

transformers - 🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

easy-entrez - Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

Biopython - Official git repository for Biopython (originally converted from CVS)

Sacred - Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

af2complex - Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

16SMaRT vs covid-19-signal deepvariant vs galaxy 16SMaRT vs ariba deepvariant vs masurca 16SMaRT vs hgvs deepvariant vs scanpy 16SMaRT vs metaflow deepvariant vs transformers 16SMaRT vs easy-entrez deepvariant vs Biopython 16SMaRT vs Sacred deepvariant vs af2complex