protein-data-bank

Open-source projects categorized as protein-data-bank
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Language: + Jupyter Notebook + Java + Python + Go + Haskell
Topics: protein-structure Pdb Bioinformatics protein-sequences Protein
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Top 5 protein-data-bank Open-Source Projects

  • graphein

    Protein Graph Library

  • BioJava

    :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

    • Project mention: Outperforming Rust DNA sequence parsing benchmarks by 50% with Mojo | news.ycombinator.com | 2024-02-08

    Here is a cache of valid and invalid FASTQ files for unit tests

    https://github.com/biojava/biojava/tree/master/biojava-genom...

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • pypdb

    A Python API for the RCSB Protein Data Bank (PDB)

  • ribbon

    Ribbon diagrams of proteins in #golang. (by fogleman)

  • hPDB

    PDB parser in Haskell

  • SaaSHub

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

protein-data-bank related posts

  • Papers about math involved in Ribbon diagrams/Richardson diagrams

    1 project | /r/bioinformatics | 24 Mar 2021

Index

What are some of the best open-source protein-data-bank projects? This list will help you:

Project Stars
1 graphein 980
2 BioJava 575
3 pypdb 294
4 ribbon 239
5 hPDB 20

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