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Top 23 Medical Open-Source Projects
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Huatuo-Llama-Med-Chinese
Repo for BenTsao [original name: HuaTuo (华驼)], Instruction-tuning Large Language Models with Chinese Medical Knowledge. 本草（原名：华驼）模型仓库，基于中文医学知识的大语言模型指令微调
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Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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openemr
The most popular open source electronic health records and medical practice management solution.
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medplum
Medplum is a healthcare platform that helps you quickly develop high-quality compliant applications.
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
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makair
🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).
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rdm
Our regulatory documentation manager. Streamlines 62304, 14971, and 510(k) documentation for software projects. (by innolitics)
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javascript-charts-performance-comparison
Public comparison of JavaScript chart libraries performance in visualizing a real-time multichannel ECG chart.
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SaaSHub
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Huatuo-Llama-Med-Chinese https://github.com/SCIR-HI/Huatuo-Llama-Med-Chinese
Project mention: Show HN: Volume rendering 3D data in Three.js and GLSL | news.ycombinator.com | 2024-04-21My app does not support DICOM files as input. Just Uint8 256x256x256 raw files that are scaled 1x1x1. Maybe if I had the chance to work on it full-time I'd have the time to add those features, but it's just a side project for now.
Have you looked into Slicer3D[0] which is a multi-platform desktop app or Open Health Image Foundations dicom viewer[1] which is web-based? Perhaps one of these will help.
[0] https://www.slicer.org/
[1] https://github.com/OHIF/Viewers
Project mention: The Billionaire Who Controls Your Medical Records (2021) | news.ycombinator.com | 2023-08-06It’s total shit.
I’m rooting for something like this in the long term: https://github.com/openemr/openemr
Project mention: Oracle of Zotero: LLM QA of Your Research Library | news.ycombinator.com | 2023-11-26Nice project!
I've spent quite a lot of time in the medical/scientific literature space. With regards to LLMs, specifically RAG, how the data is chunked is quite important. With that, I have a couple projects that might be beneficial additions.
paperetl (https://github.com/neuml/paperetl) - supports parsing arXiv, PubMed and integrates with GROBID to handle parsing metadata and text from arbitrary papers.
paperai (https://github.com/neuml/paperai) - builds embeddings databases of medical/scientific papers. Supports LLM prompting, semantic workflows and vector search. Built with txtai (https://github.com/neuml/txtai).
While arbitrary chunking/splitting can work, I've found that integrating parsing that has knowledge of medical/scientific paper structure increases the overall accuracy and experience of downstream applications.
Project mention: Medplum: Healthcare platform to quickly develop compliant applications | news.ycombinator.com | 2024-04-12
Project mention: How would you work effectively with an extremely slow 56Kbps connection? | /r/linux | 2023-12-05Use a tool like Internet-in-a-box and keep a "local" version of tons of very useful stuff like Wikipedia and Maps.
I have explored various resources, including the official Sofa website, SofaPython3 website, and YouTube videos, yet I have not been successful in locating valuable guidance on initiating the learning process for Sofa using Python. I know how to write basic Python, but I find myself perplexed regarding the necessary steps to construct models and execute simulations effectively.
Project mention: Show HN: Open-source Rule-based PDF parser for RAG | news.ycombinator.com | 2024-01-23
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
Medical related posts
- SOFA Simulation
- FLOSSing for Lent 1/40 - Free Software and Open Source
- [P] Parse research papers into structured data
- Show HN: Semantic search and workflows for medical/scientific papers
- Semantic search and workflows for medical/scientific papers
- Semantic search and workflows for medical/scientific papers
- Semantic search and workflows for medical/scientific papers
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A note from our sponsor - SaaSHub
www.saashub.com | 26 Apr 2024
Index
What are some of the best open-source Medical projects? This list will help you:
| Project | Stars | |
|---|---|---|
| 1 | Huatuo-Llama-Med-Chinese | 4,252 |
| 2 | Viewers | 2,894 |
| 3 | openemr | 2,603 |
| 4 | paperai | 1,194 |
| 5 | medplum | 1,163 |
| 6 | fo-dicom | 1,018 |
| 7 | dicom | 896 |
| 8 | iiab | 877 |
| 9 | sofa | 863 |
| 10 | torchxrayvision | 828 |
| 11 | makair | 798 |
| 12 | BCDU-Net | 647 |
| 13 | youperiod.app | 445 |
| 14 | INSIGHT | 393 |
| 15 | SurveyKit | 385 |
| 16 | MobilECG-II | 384 |
| 17 | paperetl | 315 |
| 18 | AlizaMS | 219 |
| 19 | survey_kit | 122 |
| 20 | rdm | 106 |
| 21 | can2RNET | 61 |
| 22 | ChRIS_ui | 51 |
| 23 | javascript-charts-performance-comparison | 45 |
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