Top 23 medical-imaging Open-Source Projects

• deep-learning-drizzle

  1 11,749 0.0 HTML

  Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

• Viewers

  2 2,894 9.7 TypeScript

  OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

  

Project mention: Show HN: Volume rendering 3D data in Three.js and GLSL | news.ycombinator.com | 2024-04-21

My app does not support DICOM files as input. Just Uint8 256x256x256 raw files that are scaled 1x1x1. Maybe if I had the chance to work on it full-time I'd have the time to add those features, but it's just a side project for now.

Have you looked into Slicer3D[0] which is a multi-platform desktop app or Open Health Image Foundations dicom viewer[1] which is web-based? Perhaps one of these will help.

[0] https://www.slicer.org/

[1] https://github.com/OHIF/Viewers

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• UNetPlusPlus

  2 2,170 3.1 Python

  [IEEE TMI] Official Implementation for UNet++

• medical-imaging-datasets

  1 2,021 0.0

  A list of Medical imaging datasets.

Project mention: Looking for this particular dataset on Cervical cancer [R] | /r/MachineLearning | 2023-09-24

If you are specifically looking for image datasets, you can check out this page: https://github.com/sfikas/medical-imaging-datasets

• cornerstone

  1 2,007 1.9 JavaScript

  JavaScript library to display interactive medical images including but not limited to DICOM (by cornerstonejs)

  

• dwv

  3 1,596 9.7 JavaScript

  DICOM Web Viewer: open source zero footprint medical image library.

• ITK

  7 1,339 9.8 C++

  Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

  

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• medicaldetectiontoolkit

  2 1,266 0.0 Python

  The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

  

• awesome-transformers-in-medical-imaging

  2 1,101 5.3

  A collection of resources on applications of Transformers in Medical Imaging.

• fo-dicom

  1 1,018 8.5 C#

  Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

  

• dicom

  1 896 4.2 Go

  ⚡High Performance DICOM Medical Image Parser in Go.

• torchxrayvision

  1 828 6.4 Jupyter Notebook

  TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

  

• dipy

  3 669 9.9 Python

  DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

  

• MONAILabel

  1 536 7.8 Python

  MONAI Label is an intelligent open source image labeling and learning tool.

  

• cornerstone3D

  1 423 9.8 TypeScript

  Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

  

• GDCM

  0 336 8.5 C++

  Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm

• cucim

  1 306 8.6 Jupyter Notebook

  cuCIM - RAPIDS GPU-accelerated image processing library

  

Project mention: FLaNK Stack Weekly for 13 November 2023 | dev.to | 2023-11-13

• brainchop

  16 228 8.5 JavaScript

  Brainchop: In-browser 3D MRI rendering and segmentation

  

Project mention: Release Radar • March 2024 Edition | dev.to | 2024-04-07

We featured Brainchop back in the February 2023 Release Radar. Since then, Brainchop is back with a powerful model update. Brainchop is a 3D MRI rendering and segmentation tool for analysing and processing Magnetic Resonance Imaging (MRIs) of various brains. Using AI, the new version features three classes of models for processing and analysing images of brains. Here are the three new models:

• visvis

  1 226 0.0 Python

  Visvis - the object oriented approach to visualization

• AlizaMS

  1 219 9.2 C++

  DICOM Viewer

  

• dicomviewer

  1 214 7.9 JavaScript

  DICOM Viewer in Nextcloud

• rt-utils

  2 173 3.6 Python

  A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

  

• platipy

  1 87 7.2 Python

  Processing Library and Analysis Toolkit for Medical Imaging in Python

  

• SaaSHub

  www.saashub.com sponsored

  SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

  

medical-imaging related posts

• Fasten Health - Open Source Self-hosted Personal Health Record
  6 projects | /r/selfhosted | 25 Jan 2023
• Phantom Dicom Anonymization
  1 project | /r/CKsTechNews | 20 Jan 2023
• Welcome and guide first-time contributors with a GitHub Action
  2 projects | dev.to | 12 Jan 2023
• Patients can now access all their health records digitally
  2 projects | news.ycombinator.com | 7 Oct 2022
• Holy shit, it really seems to be working!
  1 project | /r/lostarkgame | 19 Jun 2022
• Vision Transformer in Medical Imaging: A Survey
  1 project | /r/deeplearning | 26 Jan 2022
• Brain Tumor Segmentation and Classification using ResUnet.
  1 project | /r/learnmachinelearning | 24 Jan 2022
• A note from our sponsor - WorkOS
  workos.com | 25 Apr 2024

  The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning. Learn more →

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