contigs

Open-source projects categorized as contigs
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Language: + AMPL + Perl + Python + Shell
Topics: virus-discovery prophage overlapped-binning assembly-graphs genomic-regions
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featured

Top 4 contig Open-Source Projects

  • quast

    Genome assembly evaluation tool

  • abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • GraphBin2

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

  • Cenote_Unlimited_Breadsticks

    DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

contigs related posts

  • Predicting Antimicrobial Resistance in a Sequence

    4 projects | /r/bioinformatics | 25 Mar 2023

  • best way to identify AMR genes from a whole genome

    1 project | /r/genomics | 29 Jun 2022

Index

What are some of the best open-source contig projects? This list will help you:

Project Stars
1 quast 366
2 abricate 335
3 GraphBin2 27
4 Cenote_Unlimited_Breadsticks 6

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