Quast Alternatives

Similar projects and alternatives to quast based on common topics and language

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better quast alternative or higher similarity.

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Reviews and mentions

Posts with mentions or reviews of quast. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-01.
  • Deciding on genome assembly software
    6 projects | reddit.com/r/bioinformatics | 1 Oct 2021
    Have you looked into QUAST for comparison of assemblies? How big is the bacterial community? You may need to do some binning of your contigs to separate them into species specific genomes. I can suggest metaGEM (developed by me! should be online in NAR any day now) for generating MAGs for your bacterial species. Although it currently only supports short reads, it may give you an idea of what the bacterial community looks like. Maybe also look into EukCC for estimating fungal genome completeness and/or EukRep for splitting the contigs according to prokaryotic/eukaryotic provenance. You could also try estimating community composition directly from short read analysis using e.g. mOTUs2, kraken/braken, metaphlan, etc.

Stats

Basic quast repo stats
1
218
5.7
28 days ago

ablab/quast is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

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