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Rt-from-frequency-dynamics Alternatives
Similar projects and alternatives to rt-from-frequency-dynamics
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cwa-app-android
Discontinued Native Android app using the Apple/Google exposure notification API. The CWA development ends on May 31, 2023. You still can warn other users until April 30, 2023. More information:
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better rt-from-frequency-dynamics alternative or higher similarity.
rt-from-frequency-dynamics reviews and mentions
Posts with mentions or reviews of rt-from-frequency-dynamics.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-15.
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2/16 Variant Graph Update
Although several XBB.1.5 descendants are growing marginally faster, all variants that aren't XBB+486P are on the decline nationwide. This includes CH.1.1, which has been the clear #2 VOC behind XBB.1 since ~October and which has gotten some press recently.
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California tops 12 million coronavirus cases as XBB.1.5 becomes dominant
State or national variant numbers can currently be best accessed at cov-spectrum; in this link by clicking on "show regions". Covariants provides an even easier-to-read version, but it only separates a few classes of variants and in 2-week intervals. And Bedford labs variant tracker provides a unique perspective of different variant growth, but currently does not separate by states and has irregular updating.
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What we know about Omicron subvariant XBB.1.5 spreading across the U.S.
With variant tracking the main place to follow is the pango-designation project on github (but please do not post there if you go). Cov-spectrum is great for following the epidemiology of variants, as well as bedford labs. And before that covariants, but they haven't kept up with cov-spectrum's development. All of it's very simple from a modelling perspective, but applying the gisaid data to the case data is massively enlightening.
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12/8 Variant Graph Update
Though they update even more infrequently, I really like the new Bedford labs graphs. These make it very clear just how complicated trying to model the next several months would be.
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Sequencing Update - Weekend Edition
For a national perspective you can see Trevor Bedford’s GitHub. https://github.com/blab/rt-from-frequency-dynamics/tree/master/results/pango-countries
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Japan's daily COVID-19 cases rise week-on-week for 17 straight days | NHK WORLD-JAPAN News
Bedford labs splits it up into specific case counts, and shows the same thing. Here we see that BA.5 cases just stopped declining and started rising. Unfortunately they update irregularly. I'm looking specifically at the third graph here, and what makes me not want to be certain is the dark gray dots that are rising rapidly at the right. These aren't on the legend but I believe mean "other".
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October 19 2022 4 PM CDPHE Update
Bedford labs this week has added several new graphs. This looks in detail at just the US at a lot of different lineages. This looks at many countries with fewer lineages. Note that they do not have XBB.1 (everything's grouped as XBB giving variable results) and their updates are very irregular.
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October 14 2022 4 PM CDPHE Update
4 Bedford labs variant tracker is following XBB now, but not XBB.1. This isn't very useful to see growth in many countries where XBB has been spreading for a bit and XBB.1 has just been introduced, though the r~0.19 (3.8-fold weekly growth) is probably pretty accurate for Singapore.
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The level of coronavirus in Eastern Mass. waste water just shot up
covariants, cov-spectrum, outbreak.info, blab
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The Omicron SARS-CoV-2 variant is more transmissible and less fatal than seasonal influenza
But my best source, when it's updated, is Bedford labs variant tracking project.
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A note from our sponsor - InfluxDB
www.influxdata.com | 26 Apr 2024
Stats
Basic rt-from-frequency-dynamics repo stats
38
46
2.5
3 months ago
The primary programming language of rt-from-frequency-dynamics is Mathematica.
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