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condo-adapter reviews and mentions
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Great thread on the importance of EDA and confounder adjustment prior to differential expression analysis (RNA-seq)
Fwiw, last week I released a new method for batch correction that conditions on confounders which are correlated with the batch variable. Preprint here: https://arxiv.org/abs/2203.12720 and Python code here: https://github.com/calvinmccarter/condo-adapter.
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New method for batch correction confounded by outcome distribution
Software (Python) is here: https://github.com/calvinmccarter/condo-adapter
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calvinmccarter/condo-adapter is an open source project licensed under Creative Commons Attribution Share Alike 4.0 which is not an OSI approved license.
The primary programming language of condo-adapter is Jupyter Notebook.
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