Great thread on the importance of EDA and confounder adjustment prior to differential expression analysis (RNA-seq)

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Machine Learning Statistics batch-correction domain-adaptation

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  • condo-adapter

    Confounded Domain Adapter

    • Fwiw, last week I released a new method for batch correction that conditions on confounders which are correlated with the batch variable. Preprint here: https://arxiv.org/abs/2203.12720 and Python code here: https://github.com/calvinmccarter/condo-adapter.

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