condo-adapter
geomstats
condo-adapter | geomstats | |
---|---|---|
2 | 1 | |
3 | 1,156 | |
- | 1.6% | |
3.7 | 9.8 | |
about 1 year ago | 1 day ago | |
Jupyter Notebook | Jupyter Notebook | |
Creative Commons Attribution Share Alike 4.0 | MIT License |
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condo-adapter
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Great thread on the importance of EDA and confounder adjustment prior to differential expression analysis (RNA-seq)
Fwiw, last week I released a new method for batch correction that conditions on confounders which are correlated with the batch variable. Preprint here: https://arxiv.org/abs/2203.12720 and Python code here: https://github.com/calvinmccarter/condo-adapter.
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New method for batch correction confounded by outcome distribution
Software (Python) is here: https://github.com/calvinmccarter/condo-adapter
geomstats
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