NgsRelate

By ANGSD

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  • ngsLD

    Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

  • InfluxDB

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NgsRelate reviews and mentions

Posts with mentions or reviews of NgsRelate. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-09-19.
  • angsd file conversion + subsetting help?
    2 projects | /r/bioinformatics | 19 Sep 2022
    However, I realised I needed to go back and run NGSrelate on my samples (oops). This requires DoGlf 3, which according to the documentation, and this link, is a binary beagle file. I was in the process of rerunning angsd when my CPU hours ran out on the server, and it crashed (lets call this angsd run 2). It has however finished 4 days worth of analyses that I don't want to have to rerun.

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Basic NgsRelate repo stats
1
39
4.5
6 months ago

ANGSD/NgsRelate is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.

The primary programming language of NgsRelate is C++.

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