BEETL Alternatives
Similar projects and alternatives to BEETL
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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genozip
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
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community
An open community with an interest in developing and using new technologies for tensor data storage. (by zarr-developers)
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tamtools
Create and manage hybrid reference assemblies to consolidate two original DNA alignments against different reference assemblies.
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SaaSHub
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BEETL reviews and mentions
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We're wasting money by only supporting gzip for raw DNA files
If you have re-sequencing data of model species (which applies to >80% of generated sequencing data), the storage issue is often solved using CRAM/BAM formats. The FASTQ can be reconstructed if unmapped reads are stored in the file.
More general (pre-alignment) sequence compression methods never really took of (e.g. https://github.com/BEETL/BEETL). Probably because it helps so much to have common format that most workflows can start with. Here, the replacement of gzip with zstd would be a lower hanging fruit to start with.
Stats
BEETL/BEETL is an open source project licensed under BSD 2-clause "Simplified" License which is an OSI approved license.
The primary programming language of BEETL is C++.
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