How do I work with GIGANTIC csv files (20-100 gigabytes)?

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
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InfluxDB
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  • BPCells

    Scaling Single Cell Analysis to Millions of Cells

    • Maybe this would be helpful? https://github.com/bnprks/BPCells

  • db-benchmark

    reproducible benchmark of database-like ops

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • polars

    Dataframes powered by a multithreaded, vectorized query engine, written in Rust

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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