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WebTools.bundle
WebTools is a collection of tools for Plex Media Server. Like the Unsupported AppStore (UAS)
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If that's not the case and they're just disappearing completely, then you might have to resort to tools outside of Plex to find what's not getting scanned in. There used to be a Find Media tool that was part of WebTools, but it apparently doesn't work anymore (probably because Plugins were deprecated almost 4 years ago now, so most are broken). If you're comfortable running a random Python script from someone on the internet, I created this script several weeks ago that can scan your local folders and compare it against what Plex shows in your library. It's not pretty and was written quickly, but should get the job done.
If that's not the case and they're just disappearing completely, then you might have to resort to tools outside of Plex to find what's not getting scanned in. There used to be a Find Media tool that was part of WebTools, but it apparently doesn't work anymore (probably because Plugins were deprecated almost 4 years ago now, so most are broken). If you're comfortable running a random Python script from someone on the internet, I created this script several weeks ago that can scan your local folders and compare it against what Plex shows in your library. It's not pretty and was written quickly, but should get the job done.