How reliable are CNV calling methods from single cell RNAseq?

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  • infercnv

    Inferring CNV from Single-Cell RNA-Seq

    • you can predict copy number based on elevated gene expression. this idea is implemented in tools such as infercnv. In my experience you can get away with using guaranteed normal such as immune cells as your diploid reference. However also in my case I have matched CNV from bulk data to corroborate.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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