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FoundryVTT-RestRecovery
This repository adds support for D&D 5E's Arcane/Natural Recovery within the short rest dialog, and additional short rest mechanics
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FVTT-Long-Rest-HD-Healing-5e
Changes long rests in the dnd5e system to only allow hit dice (by a-ws-m)
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SurveyJS
Open-Source JSON Form Builder to Create Dynamic Forms Right in Your App. With SurveyJS form UI libraries, you can build and style forms in a fully-integrated drag & drop form builder, render them in your JS app, and store form submission data in any backend, inc. PHP, ASP.NET Core, and Node.js.
I have been toying around with those deficiencies as well. I am testing the module FVTT-Long-Rest-HD-Healing-5e. I am not sure it will do all that want, but it does seem to cover the basics of what you are looking for. https://github.com/a-ws-m/FVTT-Long-Rest-HD-Healing-5e