Computationally intensive steps in RNA-seq analysis

This page summarizes the projects mentioned and recommended in the original post on reddit.com/r/bioinformatics

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  • STAR

    RNA-seq aligner

  • bowtie2

    A fast and sensitive gapped read aligner

  • InfluxDB

    Build time-series-based applications quickly and at scale.. InfluxDB is the Time Series Platform where developers build real-time applications for analytics, IoT and cloud-native services. Easy to start, it is available in the cloud or on-premises.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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