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This might help https://github.com/McCloudS/subgen
I've found subsync to work flawlessly at timing subtitles, even with whisper transcripts.
take a look at https://github.com/abdeladim-s/subsai
I also had the same synchronization issue, so I wrote a WebUI/CLI that uses Silero-VAD that first splits the audio whenever there a silent portion (or every 30 seconds), and I haven't experienced it since:
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