Python mutational-signature Projects
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SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
Project mention: Any good tutorials/guides for cancer mutation analysis? | /r/bioinformatics | 2023-05-25Ludmil Alexandrov's tools may be a better modern choice for real data though: https://github.com/AlexandrovLab/SigProfilerExtractor
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
Index
| Project | Stars | |
|---|---|---|
| 1 | SigProfilerExtractor | 146 |
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