workflowr
webR-quarto-demos
| workflowr | webR-quarto-demos | |
|---|---|---|
| 2 | 1 | |
| 807 | 68 | |
| 0.9% | - | |
| 5.4 | 3.8 | |
| 2 months ago | about 1 year ago | |
| R | HTML | |
| GNU General Public License v3.0 or later | - |
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workflowr
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How do you manage results, plots, etc.?
I would start by saying "bioinformatics world" is a very broad term. Most of it does not involve managing multiple models, which is what MLflow seems to be for. Most work is cleaning the data and interpreting the results, which is highly project-specific. Something like workflowr is generally more appropriate, but even that is an overkill for most people.
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Restructuring a large R project. Need advice on how to wire up file paths and associated objects.
Targets stores all your data serialised on disk, and only loads them in as needed by the dependencies. For a standardised folder structure, you can take inspiration from workflowr.
webR-quarto-demos
What are some alternatives?
targets - Function-oriented Make-like declarative workflows for R
hugo-blox-builder - 😍 EASILY BUILD THE WEBSITE YOU WANT - NO CODE, JUST MARKDOWN BLOCKS! 使用块轻松创建任何类型的网站 - 无需代码。 一个应用程序，没有依赖项，没有 JS
box - Write reusable, composable and modular R code
oauth-tutorial - Like GitHub Pages, but you choose who can see it without usernames & passwords.
targets-minimal - A minimal example data analysis project with the targets R package
FielDHub - FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially replicated (p-rep) designs applied to agriculture, plant breeding, forestry, animal and biological sciences.
reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
qcoder - Lightweight package to do qualitative coding
blogdown - Create Blogs and Websites with R Markdown
vembedr - Functions to Embed Video in HTML
data-science-development-project-template - A logical, reasonably standardized, but flexible project structure for doing and sharing data science research work while developing a software tool.
namer - R package :package: for labelling chunks of RMarkdown files! :boom: