vembrane VS truvari

Compare vembrane vs truvari and see what are their differences.

vembrane

vembrane filters VCF records using python expressions (by vembrane)
Bioinformatics Filter filter-expression Vcf vcf-filtering
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truvari

Structural variant toolkit for VCFs (by ACEnglish)
structural-variation Vcf Bioinformatics Data Science Genomics vcf-comparison annotation-tool benchmark-scripts sequencing-data sv-merging
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vembrane truvari
1 1
56 287
- 2.1%
8.9 9.2
about 1 month ago 6 days ago
Python Python
MIT License MIT License
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vembrane

Posts with mentions or reviews of vembrane. We have used some of these posts to build our list of alternatives and similar projects.

truvari

Posts with mentions or reviews of truvari. We have used some of these posts to build our list of alternatives and similar projects.
  • VCF files for ML and AI
    1 project | /r/bioinformatics | 12 Nov 2021
    If you use python and are familiar with pandas (which is more data science friendly than anything VCF), Truvari has a utility for conversion. `truvari vcf2df input.vcf.gz output.jl` If the VCFs are very large, I'd also consider scikit-allele.

What are some alternatives?

When comparing vembrane and truvari you can also consider the following projects:

Sniffles - Structural variation caller using third generation sequencing

gwas2vcf - Convert GWAS summary statistics to VCF

TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.

cyvcf2 - cython + htslib == fast VCF and BCF processing

Hail - Cloud-native genomic dataframes and batch computing

locust - Write scalable load tests in plain Python 🚗💨

hap.py - Haplotype VCF comparison tools

truvari vs Sniffles truvari vs gwas2vcf truvari vs TileDB-VCF truvari vs cyvcf2 truvari vs Hail truvari vs locust truvari vs hap.py